Nature Immunology · 2024

Single-cell analysis of neuroimmune signatures of pain

scRNA-seq analysis for a study mapping immune-cell programs and neuroimmune interactions across three inflammatory pain models.

The research need

Inflammatory pain involves diverse immune and sensory-neuron populations whose changing cellular states and interactions are difficult to resolve with bulk measurements.

Analysis contribution

Ashish Jain carried out the scRNA-seq data analysis, including quality control, integration, clustering, cell-type annotation, cell-cell communication analysis, downstream comparisons, and publication-ready figures.

Research impact

  • Resolved immune-cell populations across zymosan, incision, and ultraviolet-burn pain models
  • Characterized cell-type-specific transcriptional programs associated with pain and resolution
  • Supported analysis of injury-specific neuroimmune interaction patterns
  • Delivered reproducible results and publication-ready visualizations

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