Analysis pipeline
Single-cell & spatial transcriptomics
A reproducible workflow from raw matrices through biological interpretation.
Workflow
Six stages, one traceable analysis
- 01
Input audit and experimental-design review
- 02
Cell or spot quality control and doublet assessment
- 03
Normalization, integration, and batch-effect evaluation
- 04
Cell-type annotation and marker validation
- 05
Differential abundance, expression, trajectories, or cell communication
- 06
Publication-ready figures, methods, and handoff
Built around the experiment—not a black box.
Tools and parameters are selected after reviewing study design, sample size, data quality, biological replicates, and the intended use of the results. Deliverables include methods documentation and analysis-ready outputs.
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