ATGC Bioinformatics

Analysis pipeline

OLINK proteomics analysis

Rigorous analysis of OLINK NPX data from assay quality control through differential protein and pathway interpretation.

Workflow

Six stages, one traceable analysis

  1. 01

    Study design, manifest, and NPX file review

  2. 02

    Assay, sample, and limit-of-detection quality control

  3. 03

    Normalization assessment and batch-effect evaluation

  4. 04

    Differential protein abundance modeling with relevant covariates

  5. 05

    Pathway, network, biomarker, and multi-omics integration analyses

  6. 06

    Publication-ready figures, results tables, methods, and handoff

Built around the experiment—not a black box.

Tools and parameters are selected after reviewing study design, sample size, data quality, biological replicates, and the intended use of the results. Deliverables include methods documentation and analysis-ready outputs.

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